Rep-PCR typing of Staphylococcus spp. strains in meat paste production line and identification of their origin


  • Ivan Manga Agritec Plant Research, Zemědělská 2520/16, 787 01 Šumperk
  • Marcela Klimešová Dairy Research Institute, Ke Dvoru 12a, 160 00 Praha 6
  • Jiří­ Horáček Agritec Plant Research, Zemědělská 2520/16, 787 01 Šumperk
  • Ivana Koláčková Veterinary Research Institute, Hudcova 296/70, 621 00 Brno
  • Marie Bjelková Agritec Plant Research, Zemědělská 2520/16, 787 01 Šumperk
  • Antoní­n Poní­žil Agritec Plant Research, Zemědělská 2520/16, 787 01 Šumperk
  • Ludmila Nejeschlebová Agritec Plant Research, Zemědělská 2520/16, 787 01 Šumperk



rep-PCR, typing, meat paste, staphylococci, spice


A meat paste production line and its microbial parameters have been evaluated in single Czech company. The raw meat paste samples before heat treatment were tested positively for the presence of three staphylococci species: Staphylococcus aureusStaphylococcus haemolyticus and Staphylococcus epidermidis. Subsequent microbial analysis of meat paste components and ingredients (fresh meat, water, spices, equipment) identified only the spices used as positive for S. aureus (coriander, cinnamon, badian, mustard – (10 - 40 cfu/g)) and S. haemolyticus strains (juniper, ginger). The collection of sixteen collected strains (S. aureus (n = 4), S. haemolyticus (n = 4), S. epidermidis (n = 8)) has been typed with the rep-PCR method utilising (GTG)5 primer. Analysis of the fingerprints using the unweighted pair-group method using arithmetic averages (UPGMA) clustering method revealed presence of eleven strain clusters with similarity lower than 90%: two fingerprint clusters of S. aureus, three individual clusters characteristic for S. haemolyticus and six different S. epidermidis specific clusters. The S. aureus strains from different types of spice were identical, resp. very similar. Molecular tracking composed from the rep-PCR analysis of acquired isolates and comparison among all collected fingerprints confirmed the spices to be the source of both S. aureus and S. haemolyticus strains identified in raw meat paste. The additional rep-PCR analysis of the S. epidermidis collection confirmed usability and performance of this method. The antibiotic susceptibility to fourteen individual antibiotics has been examined among the collected staphylococci strains. The predominant erythromycin resistance (68.8%) was followed with the resistance to amoxicillin/clavulanic acid (56.2%). Other resistances observed were less frequent (clindamycin – 12.5%, oxacillin – 6.3%, tetracycline – 6.3%, sulphamethoxazole-trimethoprim – 6.3%, chloramphenicol – 6.3%, novobiocin – 6.3%). As shown by our experimental results, rep-PCR with the (GTG)5 primer is an applicable tool for typing of bacterial strains and may be used for identifying the source of contamination.


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How to Cite

Manga, I. ., Klimešová, M. ., Horáček, J. ., Koláčková, I. ., Bjelková, M. ., Poní­žil, A. ., & Nejeschlebová, L. . (2015). Rep-PCR typing of Staphylococcus spp. strains in meat paste production line and identification of their origin. Potravinarstvo Slovak Journal of Food Sciences, 9(1), 166–173.

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