Assesment of molecular diversity of internal transcribed spacer region in some lines and landrace of Persian clover (Trifolium resupinatum L.)

Authors

  • Sahar Ansari Department of Plant Breeding and Biotechnology, Faculty of Agriculture, University of Zabol, Zabol
  • Mahmood Solouki Department of Plant Breeding and Biotechnology, Faculty of Agriculture, University of Zabol, Zabol
  • Baratali Fakheri Department of Plant Breeding and Biotechnology, Faculty of Agriculture, University of Zabol, Zabol
  • Bahman Fazeli-Nasab Faculty Scientific Member, Agricultural Research Institute, University of Zabol, Zabol
  • Nafiseh Mahdinezhad Assistant Professor, Department of Plant Breeding and Biotechnology, Faculty of Agriculture, University of Zabol, Zabol

DOI:

https://doi.org/10.5219/960

Keywords:

Persian clover, haplotype, genetic diversity, Ribosomal DNA, dN/dS

Abstract

Clover which is an herbaceous, annual, and self-pollinated plant belongs to fabaceae family (legumes) and has become naturalized in Iran, Asia Minor and the Mediterranean eastern suburban countries. The aim of the present study is ITS molecular evaluation of the nuclear ribosomal genes of lines and landraces of Persian Clover. The sequences were aligned using ClustalW method and by MegAlign software and the dendrogram of different phylogenetic and matrix relationships between the sequences were drawn. The results showed little genetic diversity between the lines and the landrace. The conserved sequence of the analyzed gene in the Persian clover is 561 base. Totally, 740 loci (69 and 671 loci, respectively, with and without removal and addition), 9 Singletons, and 5 haplotypes were identified. The highest rate of transfer was observed in pyrimidine (%16.3). The numerical value of the ratio (dN/dS) was 0.86, and since it was less than 1, the pure selection on the studied gene happened. The lines and landraces were not separated based on their geographic locations. In general, the results indicated that the highest rate of the regional diversity belonged to the clover plants in Lorestan region. Moreover, ITS markers did not seem suitable enough for evaluating the intra- species genetic variation, but it was quite well- suited for inter-species or intergeneric evaluation.

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Published

2018-10-16

How to Cite

Ansari, S. ., Solouki, M. ., Fakheri, B. ., Fazeli-Nasab, B. ., & Mahdinezhad, N. . (2018). Assesment of molecular diversity of internal transcribed spacer region in some lines and landrace of Persian clover (Trifolium resupinatum L.). Potravinarstvo Slovak Journal of Food Sciences, 12(1), 657–666. https://doi.org/10.5219/960